Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs74299026 chr7:135675299 G/A 0.000118 111 15.17 27.4 0 KM Plot
LAML rs74362220 chr1:26191665 A/AAC 0.00018 107 0 17.82 12.7 KM Plot
LAML rs74393117 chr6:134293256 G/A 0.000172 109 16.17 10.13 1 KM Plot
LAML rs74449116 chr2:45984197 C/T 0.000183 106 13.1 18.22 0 KM Plot
LAML rs7449576 chr6:127632693 G/T 1.86E-5 111 0.98 16.27 15.17 KM Plot
LAML rs7453272 chr6:127633959 C/T 2.25E-5 111 14.18 16.3 0.98 KM Plot
LAML rs7462373 chr8:8899318 G/C 0.000111 111 20.35 16.3 6.63 KM Plot
LAML rs74642484 chr7:135653625 T/C 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs74771218 chr5:25954408 T/A 0.000145 111 15.17 16.17 0 KM Plot
LAML rs748720 chr2:3208926 G/A 3.9E-5 111 0 16.3 15.17 KM Plot
LAML rs748721 chr2:3209162 C/T 3.9E-5 111 0 16.3 15.17 KM Plot
LAML rs74886309 chr7:135645474 A/T 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs74964628 chr5:25965031 C/T 0.000145 111 15.17 16.17 0 KM Plot
LAML rs75073260 chr13:114599617 T/G 6.98E-7 108 13.1 17.23 0.5 KM Plot
LAML rs7507780 chr19:48280773 G/A 1.06E-8 106 5.6 22.37 12.17 KM Plot